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Wikipedia:Wiki Ed/Reed College/Bioinformatics (Fall 2022)

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Course name
Bioinformatics
Institution
Reed College
Instructor
PeavyCabin
Wikipedia Expert
Ian (Wiki Ed)
Subject
Genes and Proteins
Course dates
2022-08-29 00:00:00 UTC – 2022-12-15 23:59:59 UTC
Approximate number of student editors
22


This course will explore the range of biological questions being addressed with genomic approaches, the specific genomic methods employed to address these questions, and the kinds of bioinformatic challenges and solutions that exist for working with genomic data. The primary objectives of this course are: 1) to understand the biological principles that underpin and are illuminated by specific genomic techniques; and 2) to be able to evaluate and utilize existing bioinformatics tools to work with genomic datasets. We will delve extensively into the vibrant primary literature of "omics"-based research, These sources will provide case studies to critically assess the utility of these approaches for addressing specific biological questions, as well as to examine the kinds of data that are produced and the challenges presented in analyzing them. Students will hone their understanding of this literature through class-based discussion and by contributing to Wikipedia content on a topic of choice. Computer-based laboratories will provide opportunities to develop and implement bioinformatics pipelines to analyze genomic datasets.

Student Assigned Reviewing
Stcrafton Paleopolyploidy
Hjacq
Tmmyn Sequence assembly
EliasMari MAP-Seq
Albentley 99 Exome sequencing
Benwinog Archaeogenetics
Maggiemiklas Archaeogenetics
Cornonthekaba ATAC-seq
Annagodfrey MeRIPseq, AREsite, FINDbase
Pinkpenguin27 Sequencing by ligation
False131 Sanger sequencing
Cbiles20026
DreamcatcherDog Sequence motif
Ameliea23 Galaxy (computational biology)
Dzapb Indel
SmolKraken Subtelomere
JosephB27 Sequence Read Archive
Ariellaz
Myergo